I believe there is an aftermarket in-the-camera-body filter available to improve video from the 6D. If most of your work will be stills, this might be a viable and cost-effective option.
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If you listed your $2000 camera on Craigslist and tyoed in $20 in error. would you honor it?
It's not the body. And the problems the body has aren't ones that the 40D will necessarily solve.........
I never use small or medium raw, nor do I know why anyone would. The point of raw is non-processed information; down-interpolation is processing.