Getting same error on 5D3. Can't update. Removed lens, reformatted card, downloaded again, same errors. stalls at about 66 % or get the thousand percent number.(on a Mac by the way). Removed lens, and battery grip, was able to get out of the try again cycle and all ok with other lenses, so far. Pancake a bust for now.
Update: seeing some comments in other forums that install issue might be related to Mac and Mountain Lion and additional hidden file?