Macro lenses are 'downgraded' one or two groups, because of the light lost at macro distances. The Group B lenses that don't activate all 5 dual crosses are all f/2.8 (not faster) all include a wide angle and most have substantial vignetting - the combination of distortion and vignetting mean poor coverage at the edges of the AF sensor, and that's where the four off-center f/2.8 crosses are located; I expect the 82mm front element of the new 24-70 II accounts for it being in group A.
There are clearly other nuances at work, I have no idea why the 28/2.8 loses the outermost columns of f/4 crosses, or why the 800mm and 1200mm lenses start losing AF points at the edges.
I suspect some of these assignments were not rationally predetermined, but rather were empirically determined - they mounted the lens, tested the accuracy of the AF points, and if outer ones were not reliable they were disabled in firmware by assigning the lens to a lower group.