I have found an issue with this 7D firmware version 2.0.3, that I am no longer able to register focus points. I hope that Canon will solve this major issue.
Did you completely cycle the power after the update? Remove the battery for a while to erase old memory settings and ensure the new firmware is properly loaded.
5Dmk3, 5Dmk2, Sony NEX-6 | SY14mm f/2.8, Ʃ20mm f/1.8, 35mm f/2, Ʃ35mm f/1.4A, 50mm f/1.8 I, Ʃ50mm f/1.4 EX, 100mm f/2.8L Macro, 17-40L, 24-105L, 70-200 f/2.8L IS II, 1.4x II, 70-300L, 100-400L | E-mount: 16-50 OSS, Ʃ30mm f/2.8 EX DN, 55-210 OSS | 2x FT-QL, AE-1 Program, some FD(n) & FL primes