SUBJECTIVE!! "Just take a look at the center resolution of the image"?!? What the hell kind of comparison is that!?! That's exactly what I said NOT to do! 
BTW, something is seriously up with those photos. The Nex seems to have captured trees in the background that simply don't exist in the Canon shot. Unless your trying to tell me the Sony NEX is capable of generating content that isn't there, an that that is its strength, I find this "test" 100% bogus. All your doing is saying:
"Well, the NEX image looks better to me!"
Sorry, you can't objectively determine if either of those photos is "better", too many variables (pixel size, focal length, camera settings, etc. etc.), not the least of which is the fact that you manually focused, which adds a huge human element of non-deterministic subjectivity to the test right from the get-go. If you were using contrast-detection AF in live view, or had a proper test chart to help you gauge when the image was well and truly focused, that's a different thing...but this....
BO-GUS.
Calm down, this is just a simple test, comparing the combo/image not the camera itself, I think I did the best I can. 100% live view manual focus is more accurate than auto focus, what you see is what sensor captures. Focus are both on the tile above the house at center. Since Nex sensor is 1.5 crop and focal length is 28 vs. 24 =>(1.75) the 5D II shot took is half way closer, that's why perspective changed, some of the tree appeared/disappeared.
Maybe it's the in camera software (standard jpg style in both), to me the Nex image looks has better contrast and bit sharper even it is 1/3 overexposed than 5DII.
I just find it incredibly ironic, that, after my request that you NOT simply provide an unscientific "I think X looks better" analysis, that's exactly what you did. Blew my mind that you though posting two out of camera jpegs that have had radically different processing and were manually focused (although you did mention Live View with CDAF, which is, IMO, not "manually" focusing) was anywhere remotely close to an objective comparison of two cameras.
As Neuro stated, the Sony camera applies some judicious sharpening, and its very clear at 100% on a 30" screen that such is the case. Neither image looks particularly great, to be quite frank, and I think there are a number of better subjects that could assist in demonstrating the image quality of two cameras. Regardless of the subject chosen, however...using out of camera JPEG's is ridiculous, and not indicative of the kind of IQ we get for buying cameras that support RAW output.
So, sorry, but I really do find your comparison to be extremely lacking and highly subjective. Thus, bogus.