To have to calibrate a lens to a body is in my opinion not only acceptable but necessary. Each body and each lens are made to a plus or minus tolerance, measured in 0.01 or 0.001mm or even smaller! If both lens and body are middle limit, or out in complementary directions, ie the tolerances cancel all will be fine, if they are out in the other direction the tolerances are additive, I suspect each lens and each body is allowed + or - 10 AFMA POINTS and given this, a worst case scenario could see you needing all 20 AFMA points. (I don't know how many bits of a mm = 1 AFMA point)
To halve the tolerance range could add a significant percentage (I don't know how much so I won't quantify it) to the cost through extra manufacturing time and component scrapage! And then what you still have a tolerance, yes smaller, and still need to calibrate! So halve the tolerance again, can you see where this is going? Except the next reduction will cost more than the first reduction!
[..]14 yrs toolmaking working to tenths of a thousandth of an inch so I know a bit about increase of time with lower limits and scrapage rates.[..]